DAMBE

DAMBE Free

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Publisher's description

DAMBE is a versatile software workbench for laboratories doing research in molecular biology and evolution.
Features:
Sequence alignment
¨ General sequence alignment with nucleotide and amino acid sequences
¨ Aligning protein-coding nucleotide sequences against aligned amino acid sequences

Bioinformatics tools
¨ Position weight matrix for characterizing and predicting sequence motifs
¨ Perceptron for two-group classification of sequence motifs
¨ Gibbs sampler for characterizing and predicting novel/hidden sequence motifs
¨ Hidden Markov models for modelling protein secondary structure.
¨ Secondary structure prediction
¨ tRNA anticodon identification
¨ Characterization of codon usage bias with an improved implementation of CAI
¨ Computing protein isoelectric point
¨ Peptide mass fingerprinting

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