DAMBE is a versatile software workbench for laboratories doing research in molecular biology and evolution.
¨ General sequence alignment with nucleotide and amino acid sequences
¨ Aligning protein-coding nucleotide sequences against aligned amino acid sequences
¨ Position weight matrix for characterizing and predicting sequence motifs
¨ Perceptron for two-group classification of sequence motifs
¨ Gibbs sampler for characterizing and predicting novel/hidden sequence motifs
¨ Hidden Markov models for modelling protein secondary structure.
¨ Secondary structure prediction
¨ tRNA anticodon identification
¨ Characterization of codon usage bias with an improved implementation of CAI
¨ Computing protein isoelectric point
¨ Peptide mass fingerprinting